---
bezeichner: "io.github.cytoscape/cytoscape-desktop-mcp-bridge"
art: "mcp_server"
slug: "io-github-cytoscape-cytoscape-desktop-mcp-bridge"
paketkoordinate: "npm:@cytoscape/cytoscape-desktop-mcp-bridge"
status: "aktiv"
homepage: "https://github.com/cytoscape/cytoscape-desktop-mcp"
erhebungsstand: "2026-10-12T01:17:02.346Z"
namensraum: "io.github.cytoscape"
registerseite: "https://tracevero.com/mcp/io-github-cytoscape-cytoscape-desktop-mcp-bridge"
abgerufen_am: "2026-10-12"
zugangsdaten_erforderlich: false
ausfuehrungsort: "lokal"
dateisystem_pfadargument: false
quelloffen_einsehbar: true
roh_beschreibung: "Drive a running Cytoscape Desktop to load, lay out, and style biological networks."
version: "1.0.3"
roh_umgebungsvariablen: "CYREST_PORT, CYREST_PORT"
roh_geheime_pflichtvariablen: ""
roh_transportarten: "stdio, stdio"
roh_pfadargumente: ""
roh_repository_url: "https://github.com/cytoscape/cytoscape-desktop-mcp"
roh_paketquellen: "mcpb, npm"
roh_geheime_pflichtkopfzeilen: ""
roh_pfad_umgebungsvariablen: ""
roh_remote_adressen: ""
roh_remote_hosts: ""
roh_statusmeldung: ""
roh_veroeffentlicht_am: "2026-08-11"
roh_aktualisiert_am: "2026-08-11"
roh_schemafassung: "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json"
roh_bereitstellungsform: "paket"
roh_repository_quelle: "github"
roh_repository_unterordner: ""
roh_paketbezeichner: "@cytoscape/cytoscape-desktop-mcp-bridge, https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb"
roh_paketversionen: "1.0.3"
roh_laufzeithinweise: ""
roh_umgebungsformate: ""
roh_umgebungsbeschreibungen: "CYREST_PORT=Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)"
roh_symbolformate: ""
roh_verbindungswege: "{\"packages\":[{\"registryType\":\"mcpb\",\"identifier\":\"https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb\",\"transport\":\"stdio\",\"environment\":[{\"name\":\"CYREST_PORT\",\"description\":\"Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)\",\"required\":false,\"secret\":false}],\"additional_arguments_declared\":false},{\"registryType\":\"npm\",\"identifier\":\"@cytoscape/cytoscape-desktop-mcp-bridge\",\"version\":\"1.0.3\",\"transport\":\"stdio\",\"environment\":[{\"name\":\"CYREST_PORT\",\"description\":\"Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)\",\"required\":false,\"secret\":false}],\"additional_arguments_declared\":false}],\"remotes\":[]}"
---

# Cytoscape Desktop MCP

## Measured values

| Property | Value | Source | Collected on | Level of trust | Raw declaration |
| --- | --- | --- | --- | --- | --- |
| Required secrets declared | false | MCP-Register | 2026-08-12T01:17:01.369Z | abgeleitet | roh_geheime_pflichtvariablen: ; roh_geheime_pflichtkopfzeilen: |
| Execution location | lokal | MCP-Register | 2026-08-12T01:17:01.369Z | abgeleitet | roh_transportarten: stdio, stdio |
| Path argument present | false | MCP-Register | 2026-08-12T01:17:01.369Z | abgeleitet | roh_pfadargumente: ; roh_pfad_umgebungsvariablen: |
| Repository URL listed | true | MCP-Register | 2026-08-12T01:17:01.369Z | abgeleitet | roh_repository_url: https://github.com/cytoscape/cytoscape-desktop-mcp |
| Description (raw) | Drive a running Cytoscape Desktop to load, lay out, and style biological networks. | MCP-Register | 2026-08-26T16:45:01.514Z | selbstauskunft |  |
| Declared version | 1.0.3 | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Environment variables (raw) | CYREST_PORT, CYREST_PORT | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Required secret variables (raw) |  | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Transports (raw) | stdio, stdio | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Path arguments (raw) |  | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Repository (raw) | https://github.com/cytoscape/cytoscape-desktop-mcp | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Package registries (raw) | mcpb, npm | MCP-Register | 2026-08-12T01:17:01.369Z | selbstauskunft |  |
| Required secret headers (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Path environment variables (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Remote URLs (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Remote hosts (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Registry status message (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| First listed in the registry (raw) | 2026-08-11 | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Last changed in the registry (raw) | 2026-08-11 | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Schema version of the raw record (raw) | https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Delivery form (raw) | paket | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Repository platform (raw) | github | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Repository subfolder (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Package identifiers (raw) | @cytoscape/cytoscape-desktop-mcp-bridge, https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Package versions (raw) | 1.0.3 | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Runtime hints (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Environment variable formats (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Environment variable descriptions (raw) | CYREST_PORT=Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API) | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Icon formats (raw) |  | MCP-Register | 2026-08-16T01:17:01.420Z | selbstauskunft |  |
| Connection paths (source structure) | {"packages":[{"registryType":"mcpb","identifier":"https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb","transport":"stdio","environment":[{"name":"CYREST_PORT","description":"Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)","required":false,"secret":false}],"additional_arguments_declared":false},{"registryType":"npm","identifier":"@cytoscape/cytoscape-desktop-mcp-bridge","version":"1.0.3","transport":"stdio","environment":[{"name":"CYREST_PORT","description":"Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)","required":false,"secret":false}],"additional_arguments_declared":false}],"remotes":[]} | MCP-Register | 2026-09-08T01:17:01.649Z | selbstauskunft |  |

## Links

- Namespace: [[namensraum/io-github-cytoscape|io.github.cytoscape]]

---

- Registry page: <https://tracevero.com/mcp/io-github-cytoscape-cytoscape-desktop-mcp-bridge>
- Retrieved on: 2026-10-12